PCFamily : Protein Complex Family Search
Identification of homologous protein complexes and subcomplex
For your query, PCFamily can provide:
  • Involved complex family analysis
  • Interface composition
  • Evolution analysis

Input one or multiple protein sequences or a structural complex as a query to search the complex family across multiple species

Press the to obtain more information on that specific field.


Query proteins :
Input one or multiple protein sequences in FASTA format 
Input multiple protein sequences (e.g. example 1 or example 2 )  

Query a structural complex :
Input PDB code (4 chars) :    

Reference:
Lo, Y.-S., Lin, C.-Y. and Yang, J.-M. PCFamily: a web server for searching homologous protein complexes. Nucleic Acids Research 38:W516-W522 (2010).
Related references:
1. Chen, Y.-C., Lo, Y.-S., Hsu, W.-C. and Yang, J.-M. 3D-partner: a web server to infer interacting partners and binding models. Nucleic Acids Research 35:W561-W567 (2007).
2. Chen, C.-C., Lin, C.-Y., Lo, Y.-S. and Yang, J.-M. PPISearch: a web server for searching homologous protein-protein interactions across multiple species. Nucleic Acids Research 37:W376-W383 (2009).
3. Chen, Y.-F., Hsu, K.-C., Lin, S.-R., Wang, W.-C., Huang, Y.-C. and Yang, J.-M. SiMMap: a web server for inferring site-moiety map to recognize interaction preferences between protein pockets and compound moieties. Nucleic Acids Research 38:W424-W430 (2011).
4. Liu, I.-H., Lo, Y.-S. and Yang, J.-M. PAComplex: a web server to infer peptide antigen families and binding models from TCRVpMHC complexes. Nucleic Acids Research 39:W254-W260 (2011).

Last updated 2012/01/18